I would think so. I would think we still have 2 away goal, and if they score, at the same stadium in the next leg, that will count as away goals.
They are still home and away fixtures from what i can see, just in a different location.
I don't begrudge it, as much as i feel peeved off about it. If roles were reversed, and it meant a crucial part of our season could be scunnered on return from travelling there due to national restrictions, i'd be expecting them to meet us half way and not insist on playing at home.