It still doesn't change the fact that nobody has ever stated in intentioned that the concept of religion is bad or evil because it is anti-science. That's your own miguided interpretation of others arguments against it. It is when religious doctrine and scientific discovery come into conflict, especially when religion refuses to budge on what is scientific fact, because "that's not what is written in The Book".
I and others take no issue with those who seek spiritual comfort in religious practices, but those who cite religion for answers to questions that scientific research has already disproven and still portraying them as fact. Religion itself is not a conscious thing, it is only by those who follow it who refuse to adapt, alter or change their perceptions, that 'religion' becomes an issue for others. Someone believing in a God means nothing to many who don't. Someone believing that those who don't believe in God are sinful, lacking morality and are going to burn in Hell so should be avoided, is where the problems develop and where the conflicts of opinions occur.
That is what is cited as 'bad' and has been the crux of most people's aversion to religion. Unless you're about to tell me that it is perfectly acceptible for someone of faith to treat those without, differently. Atheists themselves are not 'bad people' primarily just for lacking faith, as is perceived by those with faith; until that perception of Atheists by religious folk changes, this conflict of interest will continue.